MRIQC: individual T1w report

Summary

Subject ID: 035_ControlPre.
Date and time: 2018-05-31, 19:43.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.29007261031395276
cnr			4.465162058589753
efc			0.6146680998732458
fber			61.45829772949219
fwhm	avg		3.9303733333333333
fwhm	x		3.82036
fwhm	y		4.0663
fwhm	z		3.90446
icvs	csf		0.21057026538322568
icvs	gm		0.4584449424120845
icvs	wm		0.33098479220468985
inu	med		1.2484381198883057
inu	range		0.3265334367752075
qi	1		0.0
qi	2		0.0009083904649300063
rpve	csf		23.997594496075664
rpve	gm		12.016665062266263
rpve	wm		19.20577466982563
size	x		180
size	y		256
size	z		256
snr	csf		2.7326236287204306
snr	gm		10.443332908174487
snr	total		10.306490389684855
snr	wm		17.743514632159645
snrd	csf		11.888634150096152
snrd	gm		25.022026606643106
snrd	total		25.67328827966661
snrd	wm		40.10920408226058
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.9719301609640736
summary	bg	mad	16.33395004272461
summary	bg	mean	60.83575439453125
summary	bg	median	59.380035400390625
summary	bg	n	2981464.0
summary	bg	p05	35.362006187438965
summary	bg	p95	92.81554794311523
summary	bg	stdv	18.762849807739258
summary	csf	k	0.030110048503805942
summary	csf	mad	115.75855255126953
summary	csf	mean	295.57879638671875
summary	csf	median	296.4090576171875
summary	csf	n	17143.0
summary	csf	p05	124.7456901550293
summary	csf	p95	469.8009887695312
summary	csf	stdv	108.46733856201172
summary	gm	k	0.0062937978007342466
summary	gm	mad	59.50968551635742
summary	gm	mean	623.03857421875
summary	gm	median	623.8526000976562
summary	gm	n	33954.0
summary	gm	p05	522.7943725585938
summary	gm	p95	719.6310058593749
summary	gm	stdv	59.736045837402344
summary	wm	k	0.8270759121588687
summary	wm	mad	49.602745056152344
summary	wm	mean	996.805908203125
summary	wm	median	1000.0081787109375
summary	wm	n	172055.0
summary	wm	p05	894.4031677246094
summary	wm	p95	1083.3989501953124
summary	wm	stdv	56.358917236328125
tpm	overlap	csf	0.20361582934856415
tpm	overlap	gm	0.5282171964645386
tpm	overlap	wm	0.539214551448822
wm2max			0.6123143996620313

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	7ddd09c33053753f112c162c86bae8ee
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.