MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.29007261031395276
cnr4.465162058589753
efc0.6146680998732458
fber61.45829772949219
fwhmavg3.9303733333333333
fwhmx3.82036
fwhmy4.0663
fwhmz3.90446
icvscsf0.21057026538322568
icvsgm0.4584449424120845
icvswm0.33098479220468985
inumed1.2484381198883057
inurange0.3265334367752075
qi10.0
qi20.0009083904649300063
rpvecsf23.997594496075664
rpvegm12.016665062266263
rpvewm19.20577466982563
sizex180
sizey256
sizez256
snrcsf2.7326236287204306
snrgm10.443332908174487
snrtotal10.306490389684855
snrwm17.743514632159645
snrdcsf11.888634150096152
snrdgm25.022026606643106
snrdtotal25.67328827966661
snrdwm40.10920408226058
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.9719301609640736
summarybgmad16.33395004272461
summarybgmean60.83575439453125
summarybgmedian59.380035400390625
summarybgn2981464.0
summarybgp0535.362006187438965
summarybgp9592.81554794311523
summarybgstdv18.762849807739258
summarycsfk0.030110048503805942
summarycsfmad115.75855255126953
summarycsfmean295.57879638671875
summarycsfmedian296.4090576171875
summarycsfn17143.0
summarycsfp05124.7456901550293
summarycsfp95469.8009887695312
summarycsfstdv108.46733856201172
summarygmk0.0062937978007342466
summarygmmad59.50968551635742
summarygmmean623.03857421875
summarygmmedian623.8526000976562
summarygmn33954.0
summarygmp05522.7943725585938
summarygmp95719.6310058593749
summarygmstdv59.736045837402344
summarywmk0.8270759121588687
summarywmmad49.602745056152344
summarywmmean996.805908203125
summarywmmedian1000.0081787109375
summarywmn172055.0
summarywmp05894.4031677246094
summarywmp951083.3989501953124
summarywmstdv56.358917236328125
tpmoverlapcsf0.20361582934856415
tpmoverlapgm0.5282171964645386
tpmoverlapwm0.539214551448822
wm2max0.6123143996620313

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum7ddd09c33053753f112c162c86bae8ee
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.